Data import

Qlucore supports a wide variety of data and file formats, see list below. Great flexibility is provided with the Import Wizard.

Qlucore Omics Explorer base module supports many data file formats:

  • Aligned BAM files (RNA-seq)

  • Affymetrix CEL files

  • Affymetrix Probe Set Files (*.chp)

  • Agilent text files (*.txt)

  • Agilent Gene View files (*.txt)

  • Qlucore Data files (*.gedata)

  • Simple Data files (*.txt)

  • BioArray Software Environment files (*.base)

  • Geo Data Sets (*.soft and *.soft.gz)

  • Geo Series Matrix (*.txt and *.txt.gz)

With the NGS module support for the below files are added:

  • bam files
  • vcf files
  • bed files
  • gtf files

In addition to the data file formats listed above it is possible to import annotations (clinical information). The annotations should be stored in a .txt, .tsv or csv file. The Annotation Import Wizard makes it straightforward to import data from files with many different layouts.

For users who also use R we ship scripts that converts data in R to a '.gedata' file and back.

Data Import

The "How to Import data" document includes more details about data import.

Watch our video tutorials on how to import data

Download a free trial and test on your own data

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