Qlucore supports a wide variety of data and file formats, see list below. Great flexibility is provided with the Import Wizard.
Qlucore Omics Explorer base module supports many data file formats:
Aligned BAM files (RNA-seq)
Affymetrix CEL files
Affymetrix Probe Set Files (*.chp)
Agilent text files (*.txt)
Agilent Gene View files (*.txt)
Qlucore Data files (*.gedata)
Simple Data files (*.txt)
BioArray Software Environment files (*.base)
Geo Data Sets (*.soft and *.soft.gz)
Geo Series Matrix (*.txt and *.txt.gz)
With the NGS module support for the below files are added:
- bam files
- vcf files
- bed files
- gtf files
In addition to the data file formats listed above it is possible to import annotations (clinical information). The annotations should be stored in a .txt, .tsv or csv file. The Annotation Import Wizard makes it straightforward to import data from files with many different layouts.
For users who also use R we ship scripts that converts data in R to a '.gedata' file and back.
The "How to Import data" document includes more details about data import.
Watch our video tutorials on how to import data